Get trace trajectories from ngme fitting

Extract numerical trajectories of parameters during ngme optimization without creating plots. This function provides the underlying data used by traceplot().

get_trace_trajectories(ngme, name = "general", apply_transform = TRUE)

Arguments

ngme

ngme object

name

name of latent models, otherwise get fixed effects and measurement noise should be in names(ngme$models) or other

apply_transform

logical, whether to apply parameter transformations (default: TRUE)

Value

list containing:

trajectories

named list of trajectory matrices for each parameter

parameter_names

character vector of parameter names

transformations

list of transformation functions used

n_chains

number of chains

n_iterations

number of iterations