Data extraction for 'spde' models — graph_data

Extracts data from metric graphs to be used by 'INLA' and 'inlabru'.

Usage

graph_data_spde(
  graph_spde,
  name = "field",
  repl = NULL,
  repl_col = NULL,
  group = NULL,
  group_col = NULL,
  likelihood_col = NULL,
  resp_col = NULL,
  covariates = NULL,
  only_pred = FALSE,
  loc_name = NULL,
  tibble = FALSE,
  drop_na = FALSE,
  drop_all_na = TRUE,
  loc = deprecated()
)

Arguments

graph_spde: An inla_metric_graph_spde object built with the graph_spde() function.
name: A character string with the base name of the effect.
repl: Which replicates? If there is no replicates, one can set repl to NULL. If one wants all replicates, then one sets to repl to .all.
repl_col: Column containing the replicates. If the replicate is the internal group variable, set the replicates to ".group". If not replicates, set to NULL.
group: Which groups? If there is no groups, one can set group to NULL. If one wants all groups, then one sets to group to .all.
group_col: Which "column" of the data contains the group variable?
likelihood_col: If only a single likelihood, this variable should be NULL. In case of multiple likelihoods, which column contains the variable indicating the number of the likelihood to be considered?
resp_col: If only a single likelihood, this variable should be NULL. In case of multiple likelihoods, column containing the response variable.
covariates: Vector containing the column names of the covariates. If no covariates, then it should be NULL.
only_pred: Should only return the data.frame to the prediction data?
loc_name: Character with the name of the location variable to be used in 'inlabru' prediction.
tibble: Should the data be returned as a tidyr::tibble?
drop_na: Should the rows with at least one NA for one of the columns be removed? DEFAULT is FALSE. This option is turned to FALSE if only_pred is TRUE.
drop_all_na: Should the rows with all variables being NA be removed? DEFAULT is TRUE. This option is turned to FALSE if only_pred is TRUE.
loc: Use loc_name instead.

Value

An 'INLA' and 'inlabru' friendly list with the data.